diff --git a/weed/filer/filer_deletion.go b/weed/filer/filer_deletion.go
index e0191d7f1..48986a82a 100644
--- a/weed/filer/filer_deletion.go
+++ b/weed/filer/filer_deletion.go
@@ -129,6 +129,12 @@ func (f *Filer) DeleteChunks(chunks []*filer_pb.FileChunk) {
 	}
 }
 
+func (f *Filer) DeleteChunksNotRecursive(chunks []*filer_pb.FileChunk) {
+	for _, chunk := range chunks {
+		f.fileIdDeletionQueue.EnQueue(chunk.GetFileIdString())
+	}
+}
+
 func (f *Filer) deleteChunksIfNotNew(oldEntry, newEntry *Entry) {
 
 	if oldEntry == nil {
@@ -141,14 +147,36 @@ func (f *Filer) deleteChunksIfNotNew(oldEntry, newEntry *Entry) {
 
 	var toDelete []*filer_pb.FileChunk
 	newChunkIds := make(map[string]bool)
-	for _, newChunk := range newEntry.Chunks {
+	newDChunks, newMChunks, err := ResolveChunkManifest(f.MasterClient.GetLookupFileIdFunction(),
+		newEntry.Chunks, 0, int64(newEntry.Size()))
+	if err != nil {
+		glog.Errorf("Failed to resolve new entry chunks when delete old entry chunks. new: %s, old: %s",
+			newEntry.Chunks, oldEntry.Chunks)
+		return
+	}
+	for _, newChunk := range newDChunks {
+		newChunkIds[newChunk.GetFileIdString()] = true
+	}
+	for _, newChunk := range newMChunks {
 		newChunkIds[newChunk.GetFileIdString()] = true
 	}
 
-	for _, oldChunk := range oldEntry.Chunks {
+	oldDChunks, oldMChunks, err := ResolveChunkManifest(f.MasterClient.GetLookupFileIdFunction(),
+		oldEntry.Chunks, 0, int64(oldEntry.Size()))
+	if err != nil {
+		glog.Errorf("Failed to resolve old entry chunks when delete old entry chunks. new: %s, old: %s",
+			newEntry.Chunks, oldEntry.Chunks)
+		return
+	}
+	for _, oldChunk := range oldDChunks {
 		if _, found := newChunkIds[oldChunk.GetFileIdString()]; !found {
 			toDelete = append(toDelete, oldChunk)
 		}
 	}
-	f.DeleteChunks(toDelete)
+	for _, oldChunk := range oldMChunks {
+		if _, found := newChunkIds[oldChunk.GetFileIdString()]; !found {
+			toDelete = append(toDelete, oldChunk)
+		}
+	}
+	f.DeleteChunksNotRecursive(toDelete)
 }